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Browsing by Subject "HPC-Pronghorn"
Now showing items 1-18 of 18
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A spatialized classification approach for land cover mapping using hyperspatial imagery
(2019)Maps of classified surface features are a key output from remote sensing. Conventional methods of pixel-based classification label each pixel independently by considering only a pixel's spectral properties. While these ... -
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An rbcL mRNA-binding protein is associated with C-3 to C-4 evolution and light-induced production of Rubisco in Flaveria
(2017)Nuclear-encoded RLSB protein binds chloroplastic rbcL mRNA encoding the Rubisco large subunit. RLSB is highly conserved across all groups of land plants and is associated with positive post-transcriptional regulation of ... -
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Biology and chemistry of an Umbravirus like 2989 bp single stranded RNA as a possible causal agent for Opuntia stunting disease (engrosamiento de cladodios)-A Review.
(2019)Perhaps the most economically important disease of Opuntia ficus indica fruit cacti in Mexico is the “engrosamiento de cladodios” or macho disease. The symptoms of this disease, which has been suggested to be caused by ... -
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Crassulacean Acid Metabolism Abiotic Stress-Responsive Transcription Factors: a Potential Genetic Engineering Approach for Improving Crop Tolerance to Abiotic Stress
(2019)This perspective paper explores the utilization of abiotic stress-responsive transcription factors (TFs) from crassulacean acid metabolism (CAM) plants to improve abiotic stress tolerance in crop plants. CAM is a specialized ... -
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Crassulacean Acid Metabolism Abiotic Stress-Responsive Transcription Factors: a Potential Genetic Engineering Approach for Improving Crop Tolerance to Abiotic Stress
(2019)This perspective paper explores the utilization of abiotic stress-responsive transcription factors (TFs) from crassulacean acid metabolism (CAM) plants to improve abiotic stress tolerance in crop plants. CAM is a specialized ... -
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Divide and Conquer (DC) BLAST: fast and easy BLAST execution within HPC environments
(Peer J, 2017-06-22)Bioinformatics is currently faced with very large-scale data sets that lead to computational jobs, especially sequence similarity searches, that can take absurdly long times to run. For example, the National Center for ... -
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Evolution of l‐DOPA 4,5‐dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales
(2019)The evolution of L-DOPA 4, 5-dioxygenase activity, encoded by the gene DODA, was a keystep in the origin of betalain biosynthesis in Caryophyllales. We previously proposed that L-DOPA 4,5-dioxygenase activity evolved via ... -
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Identification of genes encoding enzymes catalyzing the early steps of carrot polyacetylene biosynthesis
(2018)Polyacetylenic lipids accumulate in various Apiaceae species after pathogen attack, suggesting that these compounds are naturally occurring pesticides and potentially valuable resources for crop improvement. These compounds ... -
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Identification of Ice Plant (Mesembryanthemum crystallinum L.) MicroRNAs Using RNA-Seq and Their Putative Roles in High Salinity Responses in Seedlings
(2016)The halophyte Mesembryanthemum crystal/loom (common or crystalline ice plant) is a useful model for studying molecular mechanisms of salt tolerance. The morphology, physiology, metabolism, and gene expression of ice plant ... -
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Ion modes in dense ionized plasmas through nonadiabatic molecular dynamics
(American Physical Society, 2020-10-27)We perform nonadiabatic simulations of warm dense aluminum based on the electron-force field (EFF) variant of wave-packet molecular dynamics. Comparison of the static ion-ion structure factor with density functional theory ... -
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Laying the foundation for crassulacean acid metabolism (CAM) Biodesign: Expression of the C4 metabolism cycle genes of CAM in Arabidopsis.
(2019)Crassulacean acid metabolism (CAM) is a specialized mode of photosynthesis that exploits a temporal CO2 pump with nocturnal CO2 uptake and concentration to reduce photorespiration, improve water-use efficiency (WUE), and ... -
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Mitochondrial haplotypes are not associated with mice selectively bred for high voluntary wheel running
(2019)Mitochondrial haplotypes have been associated with human and rodent phenotypes, including nonshiveringthermogenesis capacity, learning capability, and disease risk. Although the mammalian mitochondrial D-loop ishighly ... -
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Performance of Density Functional Theory for Predicting Methaneto-Methanol Conversion by a Tri-Copper Complex
(The Journal of Physical Chemistry, 2018)Efficient, low-temperature, and catalytic methane-to-methanol conversion (MMC) is of great interest, as methanol can be used as a liquid fuel and is a value-adding intermediate in the petrochemical industry. MMC can be ... -
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Quantification of uncertainty in aboveground biomass estimates derived from small-footprint airborne LiDAR.
(2018)To address uncertainty in biomass estimates across spatial scales, we determined aboveground biomass (AGB) in Californian forests through the use of individual tree detection methods applied to small-footprint airborne ... -
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Spatial scale affects novel and disappeared climate change projections in Alaska
(2019)The formation of novel and disappeared climates between the last glacial maximum (LGM) and the present is important to consider to understand the expansion and contraction of species niches and distributions, as well as ... -
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Sporobolus stapfianus: Insights into desiccation tolerance in the resurrection grasses from linking transcriptomics to metabolomics
(2017)Understanding the response of resurrection angiosperms to dehydration and rehydration is critical for deciphering the mechanisms of how plants cope with the rigors of water loss from their vegetative tissues. We have focused ... -
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The bracteatus pineapple genome and domestication of clonally propagated crops
(2019)Domestication of clonally propagated crops such as pineapple from South America was hypothesized to be a ‘one-step operation’. We sequenced the genome of Ananas comosus var. bracteatus CB5 and assembled 513?Mb into 25 ... -
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The pineapple genome and the evolution of CAM photosynthesis
(2015)Pineapple (Ananas comosus (L.) Merr.) is the most economically valuable crop possessing crassulacean acid metabolism (CAM), a photosynthetic carbon assimilation pathway with high water-use efficiency, and the second most ...